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ahmad |
33319 |
%define libname %mklibname Rmath |
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# (tpg) really not needed |
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# for private copy in /usr/lib/R/share/perl/Text/DelimMatch.pm |
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%define _provides_exceptions KernSmooth.so\\|MASS.so\\|R_X11.so\\|class.so\\|cluster.so\\|foreign.so\\|grDevices.so\\|grid.so\\|internet.so\\|lapack.so\\|lattice.so\\|libRblas.so\\|libRlapack.so\\|methods.so\\|mgcv.so\\|nlme.so\\|nnet.so\\|rpart.so\\|spatial.so\\|splines.so\\|stats.so\\|survival.so\\|tcltk.so\\|tools.so\\|vfonts.so\\|perl\(R::.*\) |
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%define _requires_exceptions libRblas.so\\|libRlapack.so\\|perl\(R::.*\) |
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%define _disable_ld_no_undefined 1 |
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%ifarch %mips %arm |
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%define use_java 0 |
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%else |
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%define use_java 1 |
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%endif |
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Summary: A language for data analysis and graphics |
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Name: R-base |
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Version: 2.12.0 |
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ahmad |
33474 |
Release: %mkrel 4 |
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ahmad |
33319 |
License: GPLv2+ |
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Group: Sciences/Mathematics |
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URL: http://www.r-project.org |
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Source0: http://cran.r-project.org/src/base/R-2/R-%{version}.tar.gz |
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Source1: R-icons-png.tar.bz2 |
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Source2: R.bash_completion.bz2 |
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Patch0: R-2.8.1-menu.patch |
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Patch2: R-2.8.1-underlinking.patch |
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Patch3: R-2.7.2-CVE-2008-3931.patch |
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Patch5: R-2.10.1-gfxdemos.patch |
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BuildRequires: pth-devel |
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BuildRequires: glibc-static-devel |
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BuildRequires: gcc-c++ |
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BuildRequires: cups-common |
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BuildRequires: bzip2-devel |
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BuildRequires: gcc-gfortran |
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BuildRequires: gpm-devel |
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BuildRequires: ncurses-devel |
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BuildRequires: readline-devel |
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BuildRequires: tk-devel |
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Buildrequires: tcl |
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BuildRequires: tcl-devel |
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BuildRequires: texinfo |
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BuildRequires: tetex-latex |
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BuildRequires: X11-devel |
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BuildRequires: png-devel |
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BuildRequires: jpeg-devel |
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BuildRequires: pcre-devel |
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BuildRequires: bison |
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BuildRequires: xdg-utils |
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%if %{use_java} |
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BuildRequires: java-rpmbuild |
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%endif |
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BuildRequires: paper-utils |
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BuildRequires: cairo-devel |
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BuildRequires: pango-devel |
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BuildRequires: libtiff-devel |
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BuildRequires: zip |
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BuildRequires: lapack-devel |
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BuildRequires: blas-devel |
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BuildRequires: gcc-objc |
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BuildRequires: gcc-objc++ |
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BuildRequires: imake |
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BuildRequires: gettext-devel |
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BuildRequires: glibc-static-devel |
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BuildRequires: pth-devel |
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#BuildRequires: gnustep-make |
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#BuildRequires: libgnustep-base-devel |
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#BuildRequires: gnustep-base |
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BuildRequires: lzma-devel |
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BuildRequires: icu-devel |
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BuildRequires: paper-utils |
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Requires: tcl |
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Requires: tk |
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Requires: perl |
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Requires: sed |
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Requires: x11-font-adobe-100dpi |
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Provides: R |
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Obsoletes: R-recommended <= 1.5.1 |
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Provides: R-recommended |
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BuildRoot: %{_tmppath}/%{name}-%{version}-%{release}-buildroot |
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%description |
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`GNU S' - A language and environment for statistical computing and |
| 83 |
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graphics. R is similar to the S system, which was developed at Bell |
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Laboratories by John Chambers et al. It provides a wide variety of |
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statistical and graphical techniques (linear and nonlinear modelling, |
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statistical tests, time series analysis, classification, clustering, ...). |
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R is designed as a true computer language with control-flow |
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constructions for iteration and alternation, and it allows users to |
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add additional functionality by defining new functions. For |
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computationally intensive tasks, C, C++ and Fortran code can be linked |
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and called at run time. |
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%package -n %{libname} |
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Summary: Standalone math library from the R project |
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Group: Development/Other |
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%description -n %{libname} |
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A standalone library of mathematical and statistical functions derived |
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from the R project. This packages provides the shared libRmath library. |
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%package -n %{libname}-devel |
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Summary: Standalone math library from the R project |
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Group: Development/Other |
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Provides: libRmath-devel = %{version}-%{release} |
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Requires: %{libname} = %{version}-%{release} |
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%description -n %{libname}-devel |
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A standalone library of mathematical and statistical functions derived |
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from the R project. This packages provides the static libRmath library |
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and header files. |
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%prep |
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%setup -qn R-%{version} |
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%patch0 -p1 |
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#%patch2 -p1 |
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#%patch3 -p1 -b .cve |
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%patch5 -p1 |
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#perl -pi -e "s/firefox/mozilla-firefox/" m4/R.m4 configure |
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#rm -f acinclude.m4 |
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aclocal -I ./m4 |
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autoconf --force |
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#autoreconf -fiv |
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%build |
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export R_BROWSER="$(type -p xdg-open)" |
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export R_PDFVIEWER="$(type -p xdg-open)" |
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export R_PRINTCMD="lpr" |
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#export R_BROWSER="%{_bindir}/mozilla-firefox" |
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# (tpg) do not set R_LIBS #37781 |
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#echo 'R_LIBS=${R_LIBS-'"'%{_libdir}/R/lib'"'}' >> etc/Renviron.in |
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# (tpg) try to not build with -ffast-math |
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export CFLAGS=$(echo "%{optflags}" | sed -e s/-ffast-math/-fno-fast-math/g ) |
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export CFLAGS="%{optflags}" |
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export FFLAGS=$CFLAGS |
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export CXXFLAGS=$CFLAGS |
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export FCFLAGS=$CFLAGS |
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export OBJCFLAGS=$CFLAGS |
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export F77="gfortran" |
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%if %{use_java} |
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export JAVA_HOME="%{java_home}" |
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%endif |
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export FPICFLAGS=-fPIC |
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unset DISPLAY |
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%configure2_5x \ |
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--with-tcltk \ |
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--with-tcl-config=%{_libdir}/tclConfig.sh \ |
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--with-tk-config=%{_libdir}/tkConfig.sh \ |
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--with-cairo \ |
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--with-libpng \ |
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--with-jpeglib \ |
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--with-system-zlib \ |
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--with-system-bzlib \ |
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--with-system-pcre \ |
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--with-system-xz \ |
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--with-ICU \ |
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--with-readline \ |
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--disable-BLAS-shlib \ |
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--with-lapack=%{_libdir} \ |
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--with-blas=%{_libdir} \ |
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--enable-threads=pth \ |
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--enable-R-profiling \ |
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--enable-R-shlib |
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# (tpg) somehow --prefix is not honored |
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sed -i -e 's#/usr/local#%{_prefix}#g' Makeconf |
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%make |
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pushd src/nmath/standalone |
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make |
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popd |
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| 177 |
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%make pdf |
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%make info |
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# DON'T comment "make check" below! If R doesn't pass the 'check' test |
| 181 |
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# then it is probably badly compiled, or there are problems with |
| 182 |
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# the compiler. |
| 183 |
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| 184 |
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# (tpg) disable for now checks for ix86, because they fails only in iurt! |
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#%ifarch %{ix86} |
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#%check |
| 187 |
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#make check |
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#%endif |
| 189 |
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%install |
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rm -rf %{buildroot} |
| 192 |
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# (tpg) makeinstall_std is broken here |
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%makeinstall install-info rhome=%{buildroot}%{_libdir}/R |
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pushd src/nmath/standalone |
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%makeinstall \ |
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includedir=%{buildroot}%{_includedir} \ |
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libdir=%{buildroot}%{_libdir} |
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popd |
| 201 |
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mv doc/manual/*.pdf $RPM_BUILD_DIR/R-%{version} || : |
| 203 |
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# Add soft links (useful for TK gui) |
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for i in R-admin R-data refman R-exts R-FAQ R-intro R-lang; do |
| 205 |
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ln -s %{_datadir}/doc/R-base/${i}.pdf %{buildroot}%{_libdir}/R/doc/manual/${i}.pdf |
| 206 |
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done |
| 207 |
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| 208 |
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# Remove latex versions of help pages |
| 209 |
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# |
| 210 |
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rm -rf %{buildroot}%{_libdir}/R/library/*/latex/ |
| 211 |
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| 212 |
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# Get rid of buildroot in script |
| 213 |
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for i in %{buildroot}%{_libdir}/R/bin/R %{buildroot}%{_bindir}/R %{buildroot}%{_libdir}/pkgconfig/libR*.pc; |
| 214 |
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do |
| 215 |
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sed -i "s|%{buildroot}||g" $i; |
| 216 |
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done |
| 217 |
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| 218 |
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# Remove package indices. They are rebuilt by the postinstall script. |
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# |
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rm -f %{buildroot}%{_libdir}/R/doc/html/function.html |
| 221 |
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rm -f %{buildroot}%{_libdir}/R/doc/html/packages.html |
| 222 |
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rm -f %{buildroot}%{_libdir}/R/doc/html/search/index.txt |
| 223 |
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# Fix permissions |
| 225 |
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chmod 644 %{buildroot}%{_libdir}/R/library/MASS/scripts/* |
| 226 |
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chmod 755 %{buildroot}%{_libdir}/R/share/sh/echo.sh |
| 227 |
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| 228 |
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mkdir -p %{buildroot}%{_datadir}/applications |
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ahmad |
33474 |
cat > %{buildroot}%{_datadir}/applications/mageia-%{name}.desktop <<EOF |
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ahmad |
33319 |
[Desktop Entry] |
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Name=R |
| 232 |
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Comment=A language for statistical computing |
| 233 |
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Exec=%{_bindir}/R --gui=tk |
| 234 |
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Terminal=true |
| 235 |
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Type=Application |
| 236 |
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Icon=Rlogo |
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Categories=Science;Math; |
| 238 |
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EOF |
| 239 |
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| 240 |
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# icons |
| 241 |
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mkdir -p %{buildroot}%{_iconsdir} |
| 242 |
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tar xjf %{SOURCE1} -C %{buildroot}%{_iconsdir} |
| 243 |
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| 244 |
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# remove unpackaged files |
| 245 |
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rm -f %{buildroot}%{_infodir}/dir{,.old*} |
| 246 |
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| 247 |
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# remove private perl libraries |
| 248 |
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rm -rf %{buildroot}%{_libdir}/R/share/perl/File |
| 249 |
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rm -rf %{buildroot}%{_libdir}/R/share/perl/Text |
| 250 |
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| 251 |
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# (tpg) add bash completion file |
| 252 |
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mkdir -p %{buildroot}%{_sysconfdir}/bash_completion.d |
| 253 |
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bzcat %{SOURCE2} > %{buildroot}%{_sysconfdir}/bash_completion.d/R-base |
| 254 |
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| 255 |
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%find_lang %{name} |
| 256 |
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| 257 |
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%clean |
| 258 |
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rm -rf %{buildroot} |
| 259 |
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| 260 |
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%post |
| 261 |
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%_install_info R-admin.info |
| 262 |
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%_install_info R-data.info |
| 263 |
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%_install_info R-exts.info |
| 264 |
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%_install_info R-FAQ.info |
| 265 |
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%_install_info R-intro.info |
| 266 |
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%_install_info R-lang.info |
| 267 |
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%{_bindir}/R CMD perl %{_libdir}/R/share/perl/build-help.pl --htmllist > /dev/null 2>&1 |
| 268 |
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cat %{_libdir}/R/library/*/CONTENTS > %{_libdir}/R/doc/html/search/index.txt 2>/dev/null || : |
| 269 |
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| 270 |
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%preun |
| 271 |
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if [ $1 = 0 ]; then |
| 272 |
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rm -f %{_libdir}/R/doc/html/function.html \ |
| 273 |
|
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%{_libdir}/R/doc/html/packages.html \ |
| 274 |
|
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%{_libdir}/R/doc/html/search/index.txt |
| 275 |
|
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%_remove_install_info R-admin.info |
| 276 |
|
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%_remove_install_info R-data.info |
| 277 |
|
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%_remove_install_info R-exts.info |
| 278 |
|
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%_remove_install_info R-FAQ.info |
| 279 |
|
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%_remove_install_info R-intro.info |
| 280 |
|
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%_remove_install_info R-lang.info |
| 281 |
|
|
fi |
| 282 |
|
|
|
| 283 |
|
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%files -f %{name}.lang |
| 284 |
|
|
%defattr(-,root,root) |
| 285 |
|
|
%doc README VERSION NEWS |
| 286 |
|
|
%doc R-admin.pdf R-data.pdf R-exts.pdf R-FAQ.pdf R-intro.pdf R-lang.pdf refman.pdf |
| 287 |
|
|
%{_sysconfdir}/bash_completion.d/* |
| 288 |
|
|
%{_bindir}/R |
| 289 |
|
|
%{_bindir}/Rscript |
| 290 |
|
|
%{_mandir}/*/* |
| 291 |
|
|
%{_libdir}/R |
| 292 |
|
|
%{_infodir}/*.info* |
| 293 |
|
|
%{_iconsdir}/*.* |
| 294 |
|
|
%{_liconsdir}/*.* |
| 295 |
|
|
%{_miconsdir}/*.* |
| 296 |
|
|
%{_datadir}/applications/*.desktop |
| 297 |
|
|
%{_libdir}/pkgconfig/libR.pc |
| 298 |
|
|
|
| 299 |
|
|
%files -n %{libname} |
| 300 |
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%defattr(-,root,root) |
| 301 |
|
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%{_libdir}/libRmath.so |
| 302 |
|
|
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| 303 |
|
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%files -n %{libname}-devel |
| 304 |
|
|
%defattr(-,root,root) |
| 305 |
|
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%{_libdir}/libRmath.a |
| 306 |
|
|
%{_includedir}/Rmath.h |
| 307 |
|
|
%{_libdir}/pkgconfig/libRmath.pc |
| 308 |
|
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|
| 309 |
|
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Parent Directory
| 
Revision Log