| 1 |
%define libname %mklibname Rmath |
| 2 |
# (tpg) really not needed |
| 3 |
# for private copy in /usr/lib/R/share/perl/Text/DelimMatch.pm |
| 4 |
%define _provides_exceptions KernSmooth.so\\|MASS.so\\|R_X11.so\\|class.so\\|cluster.so\\|foreign.so\\|grDevices.so\\|grid.so\\|internet.so\\|lapack.so\\|lattice.so\\|libRblas.so\\|libRlapack.so\\|methods.so\\|mgcv.so\\|nlme.so\\|nnet.so\\|rpart.so\\|spatial.so\\|splines.so\\|stats.so\\|survival.so\\|tcltk.so\\|tools.so\\|vfonts.so\\|perl\(R::.*\) |
| 5 |
%define _requires_exceptions libRblas.so\\|libRlapack.so\\|perl\(R::.*\) |
| 6 |
|
| 7 |
%define _disable_ld_no_undefined 1 |
| 8 |
|
| 9 |
%ifarch %mips %arm |
| 10 |
%define use_java 0 |
| 11 |
%else |
| 12 |
%define use_java 1 |
| 13 |
%endif |
| 14 |
|
| 15 |
Summary: A language for data analysis and graphics |
| 16 |
Name: R-base |
| 17 |
Version: 2.13.1 |
| 18 |
Release: %mkrel 1 |
| 19 |
License: GPLv2+ |
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Group: Sciences/Mathematics |
| 21 |
URL: http://www.r-project.org |
| 22 |
Source0: http://cran.r-project.org/src/base/R-2/R-%{version}.tar.gz |
| 23 |
Source1: R-icons-png.tar.bz2 |
| 24 |
Source2: R.bash_completion.bz2 |
| 25 |
Patch0: R-2.8.1-menu.patch |
| 26 |
Patch1: R-2.13.0-disable-optimized-BLAS-test.patch |
| 27 |
Patch2: R-2.8.1-underlinking.patch |
| 28 |
Patch3: R-2.7.2-CVE-2008-3931.patch |
| 29 |
Patch5: R-2.10.1-gfxdemos.patch |
| 30 |
BuildRequires: pth-devel |
| 31 |
BuildRequires: glibc-static-devel |
| 32 |
BuildRequires: gcc-c++ |
| 33 |
BuildRequires: cups-common |
| 34 |
BuildRequires: bzip2-devel |
| 35 |
BuildRequires: gcc-gfortran |
| 36 |
BuildRequires: gpm-devel |
| 37 |
BuildRequires: ncurses-devel |
| 38 |
BuildRequires: readline-devel |
| 39 |
BuildRequires: tk-devel |
| 40 |
BuildRequires: tcl |
| 41 |
BuildRequires: tcl-devel |
| 42 |
BuildRequires: texinfo |
| 43 |
BuildRequires: tetex-latex |
| 44 |
BuildRequires: libx11-devel |
| 45 |
BuildRequires: libxmu-devel |
| 46 |
BuildRequires: libxt-devel |
| 47 |
BuildRequires: png-devel |
| 48 |
BuildRequires: jpeg-devel |
| 49 |
BuildRequires: bison |
| 50 |
BuildRequires: xdg-utils |
| 51 |
%if %{use_java} |
| 52 |
BuildRequires: java-rpmbuild |
| 53 |
%endif |
| 54 |
BuildRequires: paper-utils |
| 55 |
BuildRequires: cairo-devel |
| 56 |
BuildRequires: pango-devel |
| 57 |
BuildRequires: libtiff-devel |
| 58 |
BuildRequires: zip |
| 59 |
BuildRequires: lapack-devel |
| 60 |
BuildRequires: blas-devel |
| 61 |
BuildRequires: gcc-objc |
| 62 |
BuildRequires: gcc-objc++ |
| 63 |
BuildRequires: imake |
| 64 |
BuildRequires: gettext-devel |
| 65 |
BuildRequires: glibc-static-devel |
| 66 |
BuildRequires: pth-devel |
| 67 |
#BuildRequires: gnustep-make |
| 68 |
#BuildRequires: libgnustep-base-devel |
| 69 |
#BuildRequires: gnustep-base |
| 70 |
BuildRequires: lzma-devel |
| 71 |
BuildRequires: icu-devel |
| 72 |
BuildRequires: paper-utils |
| 73 |
Requires: tcl |
| 74 |
Requires: tk |
| 75 |
Requires: perl |
| 76 |
Requires: sed |
| 77 |
Requires: x11-font-adobe-100dpi |
| 78 |
Provides: R |
| 79 |
Obsoletes: R-recommended <= 1.5.1 |
| 80 |
Provides: R-recommended |
| 81 |
BuildRoot: %{_tmppath}/%{name}-%{version}-%{release}-buildroot |
| 82 |
|
| 83 |
%description |
| 84 |
`GNU S' - A language and environment for statistical computing and |
| 85 |
graphics. R is similar to the S system, which was developed at Bell |
| 86 |
Laboratories by John Chambers et al. It provides a wide variety of |
| 87 |
statistical and graphical techniques (linear and nonlinear modelling, |
| 88 |
statistical tests, time series analysis, classification, clustering, ...). |
| 89 |
|
| 90 |
R is designed as a true computer language with control-flow |
| 91 |
constructions for iteration and alternation, and it allows users to |
| 92 |
add additional functionality by defining new functions. For |
| 93 |
computationally intensive tasks, C, C++ and Fortran code can be linked |
| 94 |
and called at run time. |
| 95 |
|
| 96 |
%package -n %{libname} |
| 97 |
Summary: Standalone math library from the R project |
| 98 |
Group: Development/Other |
| 99 |
|
| 100 |
%description -n %{libname} |
| 101 |
A standalone library of mathematical and statistical functions derived |
| 102 |
from the R project. This packages provides the shared libRmath library. |
| 103 |
|
| 104 |
%package -n %{libname}-devel |
| 105 |
Summary: Standalone math library from the R project |
| 106 |
Group: Development/Other |
| 107 |
Provides: libRmath-devel = %{version}-%{release} |
| 108 |
Requires: %{libname} = %{version}-%{release} |
| 109 |
|
| 110 |
%description -n %{libname}-devel |
| 111 |
A standalone library of mathematical and statistical functions derived |
| 112 |
from the R project. This packages provides the static libRmath library |
| 113 |
and header files. |
| 114 |
|
| 115 |
%prep |
| 116 |
%setup -qn R-%{version} |
| 117 |
%patch0 -p1 |
| 118 |
%patch1 -p1 |
| 119 |
#%patch2 -p1 |
| 120 |
#%patch3 -p1 -b .cve |
| 121 |
%patch5 -p1 |
| 122 |
|
| 123 |
#perl -pi -e "s/firefox/mozilla-firefox/" m4/R.m4 configure |
| 124 |
#rm -f acinclude.m4 |
| 125 |
aclocal -I ./m4 |
| 126 |
autoconf --force |
| 127 |
#autoreconf -fiv |
| 128 |
|
| 129 |
%build |
| 130 |
export R_BROWSER="$(type -p xdg-open)" |
| 131 |
export R_PDFVIEWER="$(type -p xdg-open)" |
| 132 |
export R_PRINTCMD="lpr" |
| 133 |
#export R_BROWSER="%{_bindir}/mozilla-firefox" |
| 134 |
|
| 135 |
# (tpg) do not set R_LIBS #37781 |
| 136 |
#echo 'R_LIBS=${R_LIBS-'"'%{_libdir}/R/lib'"'}' >> etc/Renviron.in |
| 137 |
# (tpg) try to not build with -ffast-math |
| 138 |
export CFLAGS=$(echo "%{optflags}" | sed -e s/-ffast-math/-fno-fast-math/g ) |
| 139 |
export CFLAGS="%{optflags}" |
| 140 |
export FFLAGS=$CFLAGS |
| 141 |
export CXXFLAGS=$CFLAGS |
| 142 |
export FCFLAGS=$CFLAGS |
| 143 |
export OBJCFLAGS=$CFLAGS |
| 144 |
export F77="gfortran" |
| 145 |
%if %{use_java} |
| 146 |
export JAVA_HOME="%{java_home}" |
| 147 |
%endif |
| 148 |
export FPICFLAGS=-fPIC |
| 149 |
unset DISPLAY |
| 150 |
|
| 151 |
%configure2_5x \ |
| 152 |
--with-tcltk \ |
| 153 |
--with-tcl-config=%{_libdir}/tclConfig.sh \ |
| 154 |
--with-tk-config=%{_libdir}/tkConfig.sh \ |
| 155 |
--with-cairo \ |
| 156 |
--with-libpng \ |
| 157 |
--with-jpeglib \ |
| 158 |
--with-system-zlib \ |
| 159 |
--with-system-bzlib \ |
| 160 |
--with-system-xz \ |
| 161 |
--with-ICU \ |
| 162 |
--with-readline \ |
| 163 |
--disable-BLAS-shlib \ |
| 164 |
--with-lapack=%{_libdir} \ |
| 165 |
--with-blas=%{_libdir} \ |
| 166 |
--enable-threads=pth \ |
| 167 |
--enable-R-profiling \ |
| 168 |
--enable-R-shlib |
| 169 |
|
| 170 |
%make |
| 171 |
|
| 172 |
pushd src/nmath/standalone |
| 173 |
make |
| 174 |
popd |
| 175 |
|
| 176 |
%make pdf |
| 177 |
%make info |
| 178 |
|
| 179 |
# DON'T comment "make check" below! If R doesn't pass the 'check' test |
| 180 |
# then it is probably badly compiled, or there are problems with |
| 181 |
# the compiler. |
| 182 |
%check |
| 183 |
make check |
| 184 |
|
| 185 |
|
| 186 |
%install |
| 187 |
rm -rf %{buildroot} |
| 188 |
|
| 189 |
# N.B. don't use %%makeinstall because it sets prefix= which breaks Rscript |
| 190 |
# mga#1434 |
| 191 |
%makeinstall_std install-info |
| 192 |
|
| 193 |
pushd src/nmath/standalone |
| 194 |
%makeinstall \ |
| 195 |
includedir=%{buildroot}%{_includedir} \ |
| 196 |
libdir=%{buildroot}%{_libdir} |
| 197 |
popd |
| 198 |
|
| 199 |
mv doc/manual/*.pdf $RPM_BUILD_DIR/R-%{version} || : |
| 200 |
# Add soft links (useful for TK gui) |
| 201 |
for i in R-admin R-data refman R-exts R-FAQ R-intro R-lang; do |
| 202 |
ln -s %{_datadir}/doc/R-base/${i}.pdf %{buildroot}%{_libdir}/R/doc/manual/${i}.pdf |
| 203 |
done |
| 204 |
|
| 205 |
# Remove latex versions of help pages |
| 206 |
# |
| 207 |
rm -rf %{buildroot}%{_libdir}/R/library/*/latex/ |
| 208 |
|
| 209 |
# Get rid of buildroot in script |
| 210 |
for i in %{buildroot}%{_libdir}/R/bin/R %{buildroot}%{_bindir}/R %{buildroot}%{_libdir}/pkgconfig/libR*.pc; |
| 211 |
do |
| 212 |
sed -i "s|%{buildroot}||g" $i; |
| 213 |
done |
| 214 |
|
| 215 |
# Remove package indices. They are rebuilt by the postinstall script. |
| 216 |
# |
| 217 |
rm -f %{buildroot}%{_libdir}/R/doc/html/function.html |
| 218 |
rm -f %{buildroot}%{_libdir}/R/doc/html/packages.html |
| 219 |
rm -f %{buildroot}%{_libdir}/R/doc/html/search/index.txt |
| 220 |
|
| 221 |
# Fix permissions |
| 222 |
chmod 644 %{buildroot}%{_libdir}/R/library/MASS/scripts/* |
| 223 |
chmod 755 %{buildroot}%{_libdir}/R/share/sh/echo.sh |
| 224 |
|
| 225 |
mkdir -p %{buildroot}%{_datadir}/applications |
| 226 |
cat > %{buildroot}%{_datadir}/applications/mageia-%{name}.desktop <<EOF |
| 227 |
[Desktop Entry] |
| 228 |
Name=R |
| 229 |
Comment=A language for statistical computing |
| 230 |
Exec=%{_bindir}/R --gui=tk |
| 231 |
Terminal=true |
| 232 |
Type=Application |
| 233 |
Icon=Rlogo |
| 234 |
Categories=Science;Math; |
| 235 |
EOF |
| 236 |
|
| 237 |
# icons |
| 238 |
mkdir -p %{buildroot}%{_iconsdir} |
| 239 |
tar xjf %{SOURCE1} -C %{buildroot}%{_iconsdir} |
| 240 |
|
| 241 |
# remove unpackaged files |
| 242 |
rm -f %{buildroot}%{_infodir}/dir{,.old*} |
| 243 |
|
| 244 |
# remove private perl libraries |
| 245 |
rm -rf %{buildroot}%{_libdir}/R/share/perl/File |
| 246 |
rm -rf %{buildroot}%{_libdir}/R/share/perl/Text |
| 247 |
|
| 248 |
# (tpg) add bash completion file |
| 249 |
mkdir -p %{buildroot}%{_sysconfdir}/bash_completion.d |
| 250 |
bzcat %{SOURCE2} > %{buildroot}%{_sysconfdir}/bash_completion.d/R-base |
| 251 |
|
| 252 |
%find_lang %{name} |
| 253 |
|
| 254 |
%clean |
| 255 |
rm -rf %{buildroot} |
| 256 |
|
| 257 |
%post |
| 258 |
%_install_info R-admin.info |
| 259 |
%_install_info R-data.info |
| 260 |
%_install_info R-exts.info |
| 261 |
%_install_info R-FAQ.info |
| 262 |
%_install_info R-intro.info |
| 263 |
%_install_info R-lang.info |
| 264 |
|
| 265 |
%preun |
| 266 |
if [ $1 = 0 ]; then |
| 267 |
%_remove_install_info R-admin.info |
| 268 |
%_remove_install_info R-data.info |
| 269 |
%_remove_install_info R-exts.info |
| 270 |
%_remove_install_info R-FAQ.info |
| 271 |
%_remove_install_info R-intro.info |
| 272 |
%_remove_install_info R-lang.info |
| 273 |
fi |
| 274 |
|
| 275 |
%files -f %{name}.lang |
| 276 |
%defattr(-,root,root) |
| 277 |
%doc README VERSION NEWS |
| 278 |
%doc R-admin.pdf R-data.pdf R-exts.pdf R-FAQ.pdf R-intro.pdf R-lang.pdf refman.pdf |
| 279 |
%{_sysconfdir}/bash_completion.d/* |
| 280 |
%{_bindir}/R |
| 281 |
%{_bindir}/Rscript |
| 282 |
%{_mandir}/*/* |
| 283 |
%{_libdir}/R |
| 284 |
%{_infodir}/*.info* |
| 285 |
%{_iconsdir}/*.* |
| 286 |
%{_liconsdir}/*.* |
| 287 |
%{_miconsdir}/*.* |
| 288 |
%{_datadir}/applications/*.desktop |
| 289 |
%{_libdir}/pkgconfig/libR.pc |
| 290 |
|
| 291 |
%files -n %{libname} |
| 292 |
%defattr(-,root,root) |
| 293 |
%{_libdir}/libRmath.so |
| 294 |
|
| 295 |
%files -n %{libname}-devel |
| 296 |
%defattr(-,root,root) |
| 297 |
%{_libdir}/libRmath.a |
| 298 |
%{_includedir}/Rmath.h |
| 299 |
%{_libdir}/pkgconfig/libRmath.pc |
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