| 1 |
%define libname %mklibname Rmath |
| 2 |
|
| 3 |
# Don't mangle shebangs in %{_libdir}/R/bin |
| 4 |
%define __brp_mangle_shebangs %{_bindir}/true |
| 5 |
|
| 6 |
# (tpg) really not needed |
| 7 |
# for private copy in /usr/lib/R/share/perl/Text/DelimMatch.pm |
| 8 |
%global __provides_exclude KernSmooth.so|MASS.so|R_X11.so|class.so|cluster.so|foreign.so|grDevices.so|grid.so|internet.so|lapack.so|lattice.so|libRblas.so|libRlapack.so|methods.so|mgcv.so|nlme.so|nnet.so|rpart.so|spatial.so|splines.so|stats.so|survival.so|tcltk.so|tools.so|vfonts.so|perl\\\(R::.*\\\) |
| 9 |
%global __requires_exclude libRblas.so|libRlapack.so|perl\\\(R::.*\\\) |
| 10 |
|
| 11 |
%define _disable_ld_no_undefined 1 |
| 12 |
|
| 13 |
%bcond_without tcltk |
| 14 |
|
| 15 |
%ifarch %mips |
| 16 |
%define use_java 0 |
| 17 |
%else |
| 18 |
%define use_java 1 |
| 19 |
%endif |
| 20 |
|
| 21 |
Summary: A language for data analysis and graphics |
| 22 |
Name: R-base |
| 23 |
Version: 4.3.2 |
| 24 |
Release: %mkrel 1 |
| 25 |
License: GPLv2+ |
| 26 |
Group: Sciences/Mathematics |
| 27 |
URL: https://www.r-project.org |
| 28 |
Source0: https://cran.r-project.org/src/base/R-4/R-%{version}.tar.gz |
| 29 |
Source1: https://www.r-project.org/logo/Rlogo.png#/Rlogo-%{version}.png |
| 30 |
Source2: https://www.r-project.org/logo/Rlogo.svg#/Rlogo-%{version}.svg |
| 31 |
Source3: R.bash_completion |
| 32 |
Patch0: R-2.15.3-menu.patch |
| 33 |
|
| 34 |
BuildRequires: bison |
| 35 |
BuildRequires: pkgconfig(blas) |
| 36 |
BuildRequires: pkgconfig(bzip2) |
| 37 |
BuildRequires: cups-common |
| 38 |
BuildRequires: gcc |
| 39 |
BuildRequires: gcc-c++ |
| 40 |
BuildRequires: gcc-gfortran |
| 41 |
BuildRequires: gcc-objc |
| 42 |
BuildRequires: gcc-objc++ |
| 43 |
BuildRequires: gettext-devel |
| 44 |
BuildRequires: glibc-devel |
| 45 |
BuildRequires: gpm-devel |
| 46 |
BuildRequires: icu-devel |
| 47 |
BuildRequires: imagemagick |
| 48 |
BuildRequires: imake |
| 49 |
BuildRequires: pkgconfig(libjpeg) |
| 50 |
BuildRequires: lapack-devel |
| 51 |
BuildRequires: paper-utils |
| 52 |
BuildRequires: pkgconfig(cairo) |
| 53 |
BuildRequires: pkgconfig(libcurl) |
| 54 |
BuildRequires: pkgconfig(liblzma) |
| 55 |
BuildRequires: pkgconfig(libpcre2-8) |
| 56 |
BuildRequires: pkgconfig(libpng) |
| 57 |
BuildRequires: pkgconfig(libtiff-4) |
| 58 |
BuildRequires: pkgconfig(ncurses) |
| 59 |
BuildRequires: pkgconfig(pango) |
| 60 |
BuildRequires: pkgconfig(tre) |
| 61 |
BuildRequires: pkgconfig(x11) |
| 62 |
BuildRequires: pkgconfig(xmu) |
| 63 |
BuildRequires: pkgconfig(xt) |
| 64 |
%ifnarch %arm aarch64 |
| 65 |
BuildRequires: quadmath-devel |
| 66 |
%endif |
| 67 |
BuildRequires: pkgconfig(readline) |
| 68 |
BuildRequires: texinfo |
| 69 |
BuildRequires: texinfo-tex |
| 70 |
BuildRequires: texlive |
| 71 |
BuildRequires: texlive-fontsextra |
| 72 |
BuildRequires: xdg-utils |
| 73 |
BuildRequires: zip |
| 74 |
%if %{use_java} |
| 75 |
BuildRequires: java-devel |
| 76 |
%endif |
| 77 |
%if %{with tcltk} |
| 78 |
BuildRequires: tcl |
| 79 |
BuildRequires: pkgconfig(tcl) |
| 80 |
BuildRequires: pkgconfig(tk) |
| 81 |
Requires: tcl |
| 82 |
Requires: tk |
| 83 |
Requires: x11-font-adobe-100dpi |
| 84 |
%endif |
| 85 |
|
| 86 |
Provides: R = %{version} |
| 87 |
Provides: R-recommended = %{version} |
| 88 |
Requires: perl |
| 89 |
Requires: sed |
| 90 |
|
| 91 |
# needed in order to test setlocale in make check |
| 92 |
BuildRequires: locales-en |
| 93 |
Provides: R(methods) = %{version} |
| 94 |
Provides: R(utils) = %{version} |
| 95 |
Provides: R(base) = %{version} |
| 96 |
Provides: R(class) = %{version} |
| 97 |
Provides: R(tools) = %{version} |
| 98 |
Provides: R-core = %{version} |
| 99 |
Provides: R(ABI) = 4.1 |
| 100 |
|
| 101 |
%description |
| 102 |
`GNU S' - A language and environment for statistical computing and |
| 103 |
graphics. R is similar to the S system, which was developed at Bell |
| 104 |
Laboratories by John Chambers et al. It provides a wide variety of |
| 105 |
statistical and graphical techniques (linear and nonlinear modelling, |
| 106 |
statistical tests, time series analysis, classification, clustering, ...). |
| 107 |
|
| 108 |
R is designed as a true computer language with control-flow |
| 109 |
constructions for iteration and alternation, and it allows users to |
| 110 |
add additional functionality by defining new functions. For |
| 111 |
computationally intensive tasks, C, C++ and Fortran code can be linked |
| 112 |
and called at run time. |
| 113 |
|
| 114 |
%package -n %{libname} |
| 115 |
Summary: Standalone math library from the R project |
| 116 |
Group: Development/Other |
| 117 |
|
| 118 |
%description -n %{libname} |
| 119 |
A standalone library of mathematical and statistical functions derived |
| 120 |
from the R project. This packages provides the shared libRmath library. |
| 121 |
|
| 122 |
%package -n %{libname}-devel |
| 123 |
Summary: Standalone math library from the R project |
| 124 |
Group: Development/Other |
| 125 |
Provides: libRmath-devel = %{version}-%{release} |
| 126 |
Requires: %{libname} = %{version}-%{release} |
| 127 |
|
| 128 |
%description -n %{libname}-devel |
| 129 |
A standalone library of mathematical and statistical functions derived |
| 130 |
from the R project. This packages provides the static libRmath library |
| 131 |
and header files. |
| 132 |
|
| 133 |
%prep |
| 134 |
%autosetup -p1 -n R-%{version} |
| 135 |
|
| 136 |
%build |
| 137 |
|
| 138 |
export R_BROWSER="$(type -p xdg-open)" |
| 139 |
export R_PDFVIEWER="$(type -p xdg-open)" |
| 140 |
export R_PRINTCMD="lpr" |
| 141 |
|
| 142 |
# (tpg) try to not build with -ffast-math |
| 143 |
export CFLAGS=$(echo "%{optflags}" | sed -e s/-ffast-math/-fno-fast-math/g ) |
| 144 |
export CFLAGS="%{optflags}" |
| 145 |
export FFLAGS=$CFLAGS |
| 146 |
export CXXFLAGS=$CFLAGS |
| 147 |
export FCFLAGS=$CFLAGS |
| 148 |
export OBJCFLAGS=$CFLAGS |
| 149 |
export F77="gfortran" |
| 150 |
%if %{use_java} |
| 151 |
export JAVA_HOME="%{java_home}" |
| 152 |
%endif |
| 153 |
export FPICFLAGS=-fPIC |
| 154 |
export CPICFLAGS=-fPIC |
| 155 |
unset DISPLAY |
| 156 |
|
| 157 |
# Turn off enable-lto. |
| 158 |
# lto requires that the flags for static libraries be |
| 159 |
# set specifically, and this causes link errors with CRAN |
| 160 |
# packages. |
| 161 |
# |
| 162 |
# See bug #13528 for where this can fail |
| 163 |
|
| 164 |
# the regression tests will fail with an external Lapack |
| 165 |
# 3.9.0 unless it has this fix is put into the lapack. |
| 166 |
|
| 167 |
# https://github.com/Reference-LAPACK/lapack/pull/390 |
| 168 |
# https://github.com/xianyi/OpenBLAS/pull/2442 |
| 169 |
|
| 170 |
%configure \ |
| 171 |
%if %{with tcltk} |
| 172 |
--with-tcltk \ |
| 173 |
--with-tcl-config=%{_libdir}/tclConfig.sh \ |
| 174 |
--with-tk-config=%{_libdir}/tkConfig.sh \ |
| 175 |
%else |
| 176 |
--without-tcltk \ |
| 177 |
%endif |
| 178 |
--with-cairo \ |
| 179 |
--with-libpng \ |
| 180 |
--with-jpeglib \ |
| 181 |
--with-pcre2 \ |
| 182 |
--with-system-tre \ |
| 183 |
--with-ICU \ |
| 184 |
--with-readline \ |
| 185 |
--disable-BLAS-shlib \ |
| 186 |
--with-lapack \ |
| 187 |
--with-blas \ |
| 188 |
--enable-threads=pth \ |
| 189 |
--enable-R-profiling \ |
| 190 |
--enable-R-shlib \ |
| 191 |
--disable-lto |
| 192 |
|
| 193 |
%make_build |
| 194 |
|
| 195 |
pushd src/nmath/standalone |
| 196 |
%make_build |
| 197 |
popd |
| 198 |
|
| 199 |
%make_build pdf |
| 200 |
%make_build info |
| 201 |
|
| 202 |
# DON'T comment "make check" below! If R doesn't pass the 'check' test |
| 203 |
# then it is probably badly compiled, or there are problems with |
| 204 |
# the compiler. |
| 205 |
# |
| 206 |
%check |
| 207 |
%ifarch armv7hl %{ix86} |
| 208 |
TZ=UTC LC_ALL=UTF-8 make check || (find -name "*.fail" | xargs cat) |
| 209 |
%else |
| 210 |
TZ=UTC LC_ALL=UTF-8 make check || (find -name "*.fail" | xargs cat ; exit 1) |
| 211 |
%endif |
| 212 |
|
| 213 |
%install |
| 214 |
# N.B. don't use %%makeinstall because it sets prefix= which breaks Rscript |
| 215 |
# mga#1434 |
| 216 |
%make_install install-info |
| 217 |
|
| 218 |
pushd src/nmath/standalone |
| 219 |
%makeinstall \ |
| 220 |
includedir=%{buildroot}%{_includedir} \ |
| 221 |
libdir=%{buildroot}%{_libdir} |
| 222 |
popd |
| 223 |
|
| 224 |
mv doc/manual/*.pdf %{_builddir}/%{?buildsubdir} || : |
| 225 |
# Add soft links (useful for TK gui) |
| 226 |
for i in R-admin R-data refman R-exts R-FAQ R-intro R-lang; do |
| 227 |
ln -s %{_datadir}/doc/R-base/${i}.pdf %{buildroot}%{_libdir}/R/doc/manual/${i}.pdf |
| 228 |
done |
| 229 |
|
| 230 |
# Remove latex versions of help pages |
| 231 |
# |
| 232 |
rm -rf %{buildroot}%{_libdir}/R/library/*/latex/ |
| 233 |
|
| 234 |
# Get rid of buildroot in script |
| 235 |
for i in %{buildroot}%{_libdir}/R/bin/R %{buildroot}%{_bindir}/R %{buildroot}%{_libdir}/pkgconfig/libR*.pc; |
| 236 |
do |
| 237 |
sed -i "s|%{buildroot}||g" $i; |
| 238 |
done |
| 239 |
|
| 240 |
# Remove package indices. They are rebuilt by the postinstall script. |
| 241 |
# |
| 242 |
rm -f %{buildroot}%{_libdir}/R/doc/html/function.html |
| 243 |
rm -f %{buildroot}%{_libdir}/R/doc/html/packages.html |
| 244 |
rm -f %{buildroot}%{_libdir}/R/doc/html/search/index.txt |
| 245 |
|
| 246 |
# Fix permissions |
| 247 |
chmod 644 %{buildroot}%{_libdir}/R/library/MASS/scripts/* |
| 248 |
chmod 755 %{buildroot}%{_libdir}/R/share/sh/echo.sh |
| 249 |
|
| 250 |
%if %{with tcltk} |
| 251 |
# .desktop |
| 252 |
mkdir -p %{buildroot}%{_datadir}/applications |
| 253 |
cat > %{buildroot}%{_datadir}/applications/mageia-%{name}.desktop <<EOF |
| 254 |
[Desktop Entry] |
| 255 |
Name=R |
| 256 |
GenericName=GNU R language |
| 257 |
GenericName[ru]=Язык GNU R |
| 258 |
Comment=A language for statistical computing |
| 259 |
Comment[ar]=لغة للحساب الإحصائي |
| 260 |
Comment[bg]=Език за статистичеки изчисления |
| 261 |
Comment[cs]=Jazyk pro statistické výpočty |
| 262 |
Comment[cy]=Iaith cyfrifiadura ystadegol |
| 263 |
Comment[da]=Et sprog for statistisk beregning |
| 264 |
Comment[el]=Μια γλώσσα για στατιστικούς υπολογισμούς |
| 265 |
Comment[es]=R - un lenguaje para la computación estadística |
| 266 |
Comment[et]=Statistiliste arvutusmeetodite keel |
| 267 |
Comment[eu]=Konputazio estatistikoarentzako hizkuntza |
| 268 |
Comment[fi]=Ohjelmointikieli tilastojen laskentaan |
| 269 |
Comment[fr]=Un langage pour les calculs statistiques |
| 270 |
Comment[gl]=Unha linguaxe para o cálculo estatístico |
| 271 |
Comment[he]=שפה לחישוב סטטיסטי |
| 272 |
Comment[hu]=Nyelv statisztikai programozáshoz |
| 273 |
Comment[is]=Forritunarmál til tölfræðireikninga |
| 274 |
Comment[it]=R, un linguaggio per elaborazioni statistiche |
| 275 |
Comment[ky]=R - статистикалык эсептөө тили |
| 276 |
Comment[nb]=Et program for statistisk beregning |
| 277 |
Comment[nl]=Een taal voor statistische berekeningen |
| 278 |
Comment[nn]=Statistiske utrekningar og simuleringar |
| 279 |
Comment[pl]=Język służący do obliczeń statystycznych |
| 280 |
Comment[pt]=Uma linguagem para computação estatística |
| 281 |
Comment[pt_BR]=Uma linguagem para cálculos estatísticos |
| 282 |
Comment[ro]=Un limbaj pentru calcul statistic |
| 283 |
Comment[ru]=R - язык статистических вычислений |
| 284 |
Comment[sl]=Jezik za statistično računanje |
| 285 |
Comment[sv]=Ett språk för statistisk databehandling |
| 286 |
Comment[tr]=İstatiksel hesaplamalar için dil |
| 287 |
Comment[uk]=Мова для статистичних розрахунків |
| 288 |
Comment[zh_CN]=一种统计计算语言 |
| 289 |
Comment[zh_TW]=一種用於統計學計算的語言 |
| 290 |
Exec=%{_bindir}/R --gui=tk |
| 291 |
Terminal=true |
| 292 |
Type=Application |
| 293 |
Icon=Rlogo |
| 294 |
Categories=Science;Math; |
| 295 |
EOF |
| 296 |
|
| 297 |
# icons |
| 298 |
for S in 16 22 24 32 48 64 96 128 192 256 512; do |
| 299 |
%__install -d -m755 %{buildroot}%{_iconsdir}/hicolor/$S\x$S/apps |
| 300 |
convert -scale $S\x$S %{SOURCE1} %{buildroot}%{_iconsdir}/hicolor/$S\x$S/apps/Rlogo.png |
| 301 |
done |
| 302 |
%__install -d -m755 %{buildroot}%{_iconsdir}/hicolor/scalable/apps |
| 303 |
%__install -m644 %{SOURCE2} %{buildroot}%{_iconsdir}/hicolor/scalable/apps/Rlogo.svg |
| 304 |
%endif |
| 305 |
|
| 306 |
# remove unpackaged files |
| 307 |
rm -f %{buildroot}%{_infodir}/dir{,.old*} |
| 308 |
|
| 309 |
# remove private perl libraries |
| 310 |
rm -rf %{buildroot}%{_libdir}/R/share/perl/File |
| 311 |
rm -rf %{buildroot}%{_libdir}/R/share/perl/Text |
| 312 |
|
| 313 |
# (tpg) add bash completion file |
| 314 |
mkdir -p %{buildroot}%{_sysconfdir}/bash_completion.d |
| 315 |
cp %{SOURCE3} %{buildroot}%{_sysconfdir}/bash_completion.d/R-base |
| 316 |
|
| 317 |
|
| 318 |
%files |
| 319 |
%doc README VERSION |
| 320 |
%doc R-admin.pdf R-data.pdf R-exts.pdf R-FAQ.pdf R-intro.pdf R-lang.pdf |
| 321 |
%{_bindir}/R |
| 322 |
%{_bindir}/Rscript |
| 323 |
%{_libdir}/R/bin |
| 324 |
%{_libdir}/R/doc |
| 325 |
%{_libdir}/R/etc |
| 326 |
%{_libdir}/R/include |
| 327 |
%{_libdir}/R/lib |
| 328 |
%{_libdir}/R/modules |
| 329 |
%{_libdir}/R/share |
| 330 |
%dir %{_libdir}/R/library |
| 331 |
%{_libdir}/R/library/KernSmooth |
| 332 |
%{_libdir}/R/library/MASS |
| 333 |
%{_libdir}/R/library/Matrix |
| 334 |
%{_libdir}/R/library/base |
| 335 |
%{_libdir}/R/library/boot |
| 336 |
%{_libdir}/R/library/class |
| 337 |
%{_libdir}/R/library/cluster |
| 338 |
%{_libdir}/R/library/codetools |
| 339 |
%{_libdir}/R/library/compiler |
| 340 |
%{_libdir}/R/library/datasets |
| 341 |
%{_libdir}/R/library/foreign |
| 342 |
%{_libdir}/R/library/grDevices |
| 343 |
%{_libdir}/R/library/graphics |
| 344 |
%{_libdir}/R/library/grid |
| 345 |
%{_libdir}/R/library/lattice |
| 346 |
%{_libdir}/R/library/methods |
| 347 |
%{_libdir}/R/library/mgcv |
| 348 |
%{_libdir}/R/library/nlme |
| 349 |
%{_libdir}/R/library/nnet |
| 350 |
%{_libdir}/R/library/parallel |
| 351 |
%{_libdir}/R/library/rpart |
| 352 |
%{_libdir}/R/library/spatial |
| 353 |
%{_libdir}/R/library/splines |
| 354 |
%{_libdir}/R/library/stats |
| 355 |
%{_libdir}/R/library/stats4 |
| 356 |
%{_libdir}/R/library/survival |
| 357 |
%{_libdir}/R/library/tcltk |
| 358 |
%{_libdir}/R/library/tools |
| 359 |
%{_libdir}/R/library/utils |
| 360 |
%dir %{_libdir}/R/library/translations/ |
| 361 |
%{_libdir}/R/library/translations/DESCRIPTION |
| 362 |
%lang(da) %{_libdir}/R/library/translations/da/ |
| 363 |
%lang(de) %{_libdir}/R/library/translations/de/ |
| 364 |
%lang(en) %{_libdir}/R/library/translations/en*/ |
| 365 |
%lang(es) %{_libdir}/R/library/translations/es/ |
| 366 |
%lang(fa) %{_libdir}/R/library/translations/fa/ |
| 367 |
%lang(fr) %{_libdir}/R/library/translations/fr/ |
| 368 |
%lang(it) %{_libdir}/R/library/translations/it/ |
| 369 |
%lang(ja) %{_libdir}/R/library/translations/ja/ |
| 370 |
%lang(ko) %{_libdir}/R/library/translations/ko/ |
| 371 |
%lang(lt) %{_libdir}/R/library/translations/lt/ |
| 372 |
%lang(nn) %{_libdir}/R/library/translations/nn/ |
| 373 |
%lang(pl) %{_libdir}/R/library/translations/pl/ |
| 374 |
%lang(pt_BR) %{_libdir}/R/library/translations/pt_BR/ |
| 375 |
%lang(ru) %{_libdir}/R/library/translations/ru/ |
| 376 |
%lang(tr) %{_libdir}/R/library/translations/tr/ |
| 377 |
%lang(zh_CN) %{_libdir}/R/library/translations/zh_CN/ |
| 378 |
%lang(zh_TW) %{_libdir}/R/library/translations/zh_TW/ |
| 379 |
%{_infodir}/*.info* |
| 380 |
%{_libdir}/R/COPYING |
| 381 |
%{_libdir}/R/SVN-REVISION |
| 382 |
%{_libdir}/pkgconfig/libR.pc |
| 383 |
%{_mandir}/*/* |
| 384 |
%{_sysconfdir}/bash_completion.d/* |
| 385 |
%if %{with tcltk} |
| 386 |
%{_datadir}/applications/*.desktop |
| 387 |
%_iconsdir/hicolor/*/apps/Rlogo.png |
| 388 |
%_iconsdir/hicolor/scalable/apps/Rlogo.svg |
| 389 |
%endif |
| 390 |
|
| 391 |
%files -n %{libname} |
| 392 |
%{_libdir}/libRmath.so |
| 393 |
|
| 394 |
%files -n %{libname}-devel |
| 395 |
%{_libdir}/libRmath.a |
| 396 |
%{_includedir}/Rmath.h |
| 397 |
%{_libdir}/pkgconfig/libRmath.pc |
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